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| Composition Setup |
ScanImage
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r3.5.1
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is
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an
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incremental
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release,
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relative
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to
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r3.5.
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It
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is
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being
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co-released
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with
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ScanImage
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r3.6,
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primarily
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as
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a
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benefit
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to
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legacy
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users.
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The
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most
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notable
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change
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is
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a
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restoration
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of
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Cycle
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mode
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functionality,
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which
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had
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been
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broken
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in
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r3.5.
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Cycle
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mode
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is
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a
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feature
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allowing
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a
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sequence
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of
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acquisitions
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to
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be
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obtained
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at
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a
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list
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of
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pre-defined
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motor
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positions.
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For
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users
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already
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using
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Cycle
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mode
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or
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requiring
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such
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functionality
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in
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their
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work,
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ScanImage
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r3.5.1
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should
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now
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be
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used.
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All
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other
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users,
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both
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new
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and
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old
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should
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migrate/adopt
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ScanImage
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r3.6
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instead.
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Find
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below
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a
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listing
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of
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all
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notable
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enhancements/changes/bugixes
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in
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r3.5.1.
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Refer
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further
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below
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to
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the
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ScanImage
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3.5.0
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README
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for
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information
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on
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the
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original
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r3.5
...
release.
Enhancements
- Trigger time is now logged with increased accuracy to the TIF header file
- LOOP periods timing now occurs with greater accuracy
- Spine counting analysis software has been added to the distribution, and is accessible as scim_spineAnalysis()
- RepeatPeriod and RepeatsTotal values are now stored to image header
- Double-move is avoided during cycle operations when both a cycle and stack home are defined, saving inter-Repeat time
- The number of cycles to execute can now be specified in the Cycle Controls window
Changes
- Distribution has a new directory structure, consisting of 2 directories – ScanImage and scim. The latter directory contains various utility functions beginning with prefix scim that are intended/available for the user. The new directory structure matches that of r3.6.
- The standard_model.INI file now contains only those values which can or need to be edited by user for their rig. The remaining values, not to be user-edited, are now stored in a separate internal.INI file as part of the distribution. This new scheme matches that of r3.6.
Bugfixes
- Cycle mode was completely unoperational in r3.5 with a show-stopper bug.
- The UserFcn GUI was not working properly due to a case-sensitivity bug.
- The option for 'safe' hot-keys in the User Preferences dialog was being ignored
- Saving USR file was not correctly saving the currently active Configuration (CFG File)
- GUI controls would be blanked out when FOCUS mode acquisition ended by timeout, rather than explicit Abort
- High pixel value in LUTs could be below low pixel value
- Resets of merge window following configuration changes had dimensions transposed
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